GTOP¥í¥´GTOP¤È¤Ï?

Last update : Sep 16 2008
Go to the English pages

  1. GTOP¤È¤Ï¡©

    GTOP¥Ç¡¼¥¿¥Ù¡¼¥¹¤Ï¡¢¥²¥Î¥à¤Ë¥³¡¼¥É¤µ¤ì¤ëÁ´¥¿¥ó¥Ñ¥¯¼Á¤ÎÇÛÎó¥Ç¡¼¥¿¤ò²òÀϤ·¤¿·ë²Ì¤ò ¤Þ¤È¤á¤¿¥Ç¡¼¥¿¥Ù¡¼¥¹¤Ç¤¹¡£ ¹ñΩ°äÅÁ³Ø¸¦µæ½ê¤Î µìÂçÎÌ°äÅÁ¾ðÊ󸦵漼 ¤ÇÀ½ºî¤µ¤ì¤Þ¤·¤¿¡£ÇÛÎóÁêƱÀ­²òÀϤò ¼ç¤Ê¼êÃʤȤ·¤Æ¡¢Î©Âι½Â¤¤Î¾ðÊó¤òÀѶËŪ¤ËÍøÍѤ·¤Æ¤¤¤ë¤³¤È ¤¬ÆÃħ¤Ç¤¹¡£

    °Ê²¼¤ÎÊýË¡¤ò»È¤Ã¤Æ²òÀϤ·¤Æ¤¤¤Þ¤¹¡£

    ¸½»þÅÀ¤Ç²òÀϤ¬½ª¤ï¤Ã¤Æ¤¤¤ë¼ï¤Ë¤Ä¤¤¤Æ¤Ï Organism¤Î ¥Ú¡¼¥¸¤ò¤´Í÷¤¯¤À¤µ¤¤¡£

  2. ³ÆORF¤Î²òÀÏ·ë²Ì¤Îɽ¼¨

    Organism¤Î¥Ú¡¼¥¸¤«¤é°äÅÁ»Ò¤Î²òÀÏ·ë²Ì¤Ø¥¢¥¯¥»¥¹¤¹¤ë¤³¤È¤¬½ÐÍè¤Þ¤¹¡£

    °äÅÁ»Ò¤´¤È¤Ë²¼¤Î¤è¤¦¤Ê²èÌ̤¬É½¼¨¤µ¤ì¤Þ¤¹¡£¤³¤ì¤Ï ¥Ò¥È¤ÎENSG00000196876.3¤È¤¤¤¦°äÅÁ»Ò¤Î¾ì¹ç¤ÎÎã¤Ç¤¹¡£ ( ENSG00000196876.3¤Î¥Ú¡¼¥¸¤ò¸«¤ë)


    ¥Þ¥¹¥¿¡¼²èÌÌ

  3. ͽ¬¤µ¤ì¤¿Î©Âι½Â¤¤Îɽ¼¨

    ͽ¬¤µ¤ì¤¿PDB¥³¡¼¥É¡¢Î㤨¤Ð¾å¿Þ¤Î1ebfA ¤ò¥¯¥ê¥Ã¥¯¤¹¤ë¤È¡¢°Ê²¼¤Î¤è¤¦¤Ê¹½Â¤¤È¤Î¥¢¥é¥¤¥á¥ó¥È ¤ò¸«¤ë¤³¤È¤¬¤Ç¤­¤Þ¤¹ (1ebfA¤Î¥¢¥é¥¤¥á¥ó¥È¤ò¸«¤ë)¡£ ¤µ¤é¤Ë¤½¤ì¤é¤ÎΩÂι½Â¤¤òɽ¼¨¤µ¤»¤ë¤Ë¤Ï£³¤Ä¤ÎÊýË¡(²èÁü¡¢Chime-plugin¡¢rasmol) ¤Î£³¤Ä¤ÎÊýË¡¤¬¤¢¤Þ¤¹¡£²èÌ̾å¤Î¥¢¥¤¥³¥ó¡¢[3D(image)]¡¢[3d(Chime-plugin)]¡¢[3D(rasmol)]¤Çɽ¼¨¤Ç¤­¤Þ¤¹¡£Chime-plugin¤Èrasmol¤Ë¤Ä¤¤¤Æ¤Ï ¤ª»È¤¤¤Î¥Ö¥é¥¦¥¶¤òÀßÄꤹ¤ëɬÍפ¬¤¢¤ê¤Þ¤¹¡£¤³¤ÎÀßÄê¤Î¾ÜºÙ¤Ë¤Ä¤¤¤Æ¤Ï ¡ÖΩÂι½Â¤¤òɽ¼¨¤¹¤ëÊýË¡¡×¤Î¥Ú¡¼¥¸ ¤ò¤´Í÷¤¯¤À¤µ¤¤¡£


    thrA¥¢¥é¥¤¥á¥ó¥È

    °äÅÁ»Ò¤¬¤¤¤¯¤Ä¤«¤Î¥¨¥¯¥½¥ó¤«¤éÀ®¤êΩ¤Ã¤Æ¤¤¤ë¾ì¹ç¡¢¥¢¥é¥¤¥á¥ó¥È¾å¤Ë¥¨¥¯¥½¥óËè¤Ë¿§Ê¬¤±¤µ¤ì¤¿ ¥Þ¡¼¥­¥ó¥°¤òɽ¼¨¤Ç¤­¤Þ¤¹¡£


    EXON¥¹¥¤¥Ã¥Á
    Ìð°õ
    EXON¥¢¥é¥¤¥á¥ó¥È

    [Exon Display ON]¤Î¾õÂÖ¤ÇΩÂι½Â¤¤òɽ¼¨¤µ¤»¤ë¤È¡¢¥Þ¡¼¥­¥ó¥°¤ÈƱ¤¸ÇÛ¿§¤òΩÂι½Â¤¤Ë»Ü¤·¤Þ¤¹¡£
    EXONΩÂÎ

  4. ¥Þ¥¹¥¿¡¼¥Õ¥¡¥¤¥ë GTOP¤Ç¤Ï¡¢¸¡º÷·ë²Ì¤Î½¸Ìó¾ðÊó¤ò¥Õ¥¡¥¤¥ë¤Ë¤Þ¤È¤á¤Æ¤¤¤Þ¤¹¡£¤³¤Î¥Õ¥¡¥¤¥ë¤Ï¥Þ¥¹¥¿¡¼¥Õ¥¡¥¤¥ë¤È¸Æ¤Ð¤ì¡¢ ·ë²Ì¤Î¥°¥é¥Õɽ¼¨¤Î²¼¤Ëɽ¼¨¤µ¤ì¤Þ¤¹¡£¥Þ¥¹¥¿¡¼¥Õ¥¡¥¤¥ë¤Î¾Ü¤·¤¤ÀâÌÀ¤Ï¡¢What is master file ?¤ò¤´Í÷¤¯¤À¤µ¤¤¡£

  5. ¸¡º÷ ¥Þ¥¹¥¿¡¼¥Õ¥¡¥¤¥ë¤Î¹àÌܤËÂФ¹¤ë¸¡º÷¤¬¹Ô¤¨¤Þ¤¹¡£¸¡º÷¹àÌܤϰäÅÁ»Ò̾¤ä¥³¥á¥ó¥ÈÅù¤ÎÁ´¤Æ¤Î¹àÌܤ¬ÂоݤȤʤê¤Þ¤¹¡£ ¸¡º÷¤ÏÁ´¤Æ¤ÎÀ¸Êª¼ï¤ËÂФ¹¤ë¸¡º÷¤Î¤Û¤«¡¢¸ÅºÙ¶Ý¡¢¿¿ÀµºÙ¶Ý¡¢¿¿³ËÀ¸Êª¡¢¥¦¥¤¥ë¥¹¤Î¤ß¤ËÂФ¹¤ë¸¡º÷¤ä¤¢¤ëÀ¸Êª¼ï¤Î¤ß¤ËÂФ¹¤ë¸¡º÷¤¬¹Ô¤¨¤Þ¤¹¡£ ¥¯¥¨¥ê¡¼¤Ï3¤Ä¤Þ¤Ç»ØÄ꤬¹Ô¤¨¤Þ¤¹¡£³Æ¥¯¥¨¥ê¡¼¤ÏAND¾ò·ï¤Ç·Ò¤¬¤Ã¤Æ¤Þ¤¹¤Î¤Ç¡¢¹Ê¹þ¤ß¤ò¹Ô¤¤¤¿¤¤¾ì¹ç¤Ë¤´ÍøÍѤ¯¤À¤µ¤¤¡£
    ¥µ¡¼¥Á²èÌÌ

    ¤Þ¤¿¡¢¤³¤ì°Ê³°¤Ë¤â²¼µ­¤Î4¤Ä¤Î¸¡º÷¤¬²Äǽ¤Ç¤¹¡£

    1. ³ÈÄ¥ÈÇ¥­¡¼¥ï¡¼¥É¥µ¡¼¥Á
      ¸¡º÷¤ò¹Ô¤¦ÂоݤÎÀ¸Êª¼ï¤òºÙ¤«¤¯»ØÄꤹ¤ë¤³¤È¤¬½ÐÍè¤Þ¤¹¡£

    2. ¥Õ¥¡¥ß¥ê¡¼¥é¥ó¥­¥ó¥°
      ³ÆÀ¸Êª¼ï¤´¤È¤Ë¡¢SCOP,Pfam, ProSite, Membrane¤Ê¤É¤Ë¤è¤ë ÃÁÇò¼Á¤Î¥Õ¥¡¥ß¥ê¤ò¿¤¤½ç¤Ëɽ¼¨¤¹¤ë¤³¤È¤¬¤Ç¤­¤Þ¤¹¡£ Âç¤Þ¤«¤Ë¤Ë¥²¥Î¥à¤Î¹½À®Í×ÁǤÎÆÃħ¤ò¤Ä¤«¤ß¤¿¤¤¤È¤­¤ËÊØÍø¤Ç¤¹¡£

    3. ÇÛÎó¥Û¥â¥í¥¸¡¼¸¡º÷
      ¥¢¥ß¥Î»ÀÇÛÎó¤òÆþÎϤ·¤Æ¡¢GTOPÆâ¤Î¥¿¥ó¥Ñ¥¯¼ÁÇÛÎó¤Ë ÂФ·¤ÆÇÛÎ󸡺÷¤ò¹Ô¤¦¤³¤È¤¬¤Ç¤­¤Þ¤¹¡£

    4. ÇÛÎó¥Æ¥­¥¹¥È¸¡º÷
      ¥¢¥ß¥Î»ÀÇÛÎó¤òÆþÎϤ·¤Æ¡¢GTOPÆâ¤Î¥¿¥ó¥Ñ¥¯¼ÁÇÛÎó¤ÎÉô°Ì¤Ë ÂФ·¤Æ´°Á´°ìÃפ¹¤ëÇÛÎó¤ò¸¡º÷¤¹¤ë¤³¤È¤¬¤Ç¤­¤Þ¤¹¡£

  6. ¤Þ¤È¤á¤Î¥Ú¡¼¥¸

    ¥²¥Î¥àÁ´ÂΤγƼï¤ÎÅý·×¥Ç¡¼¥¿¤ò¤Þ¤È¤á¤¿¤Þ¤È¤á¤Î¥Ú¡¼¥¸¤ò¸«¤Æ¤¤¤¿¤À¤¯¤È¡¢Á´¤Æ¤Î¥¿¥ó¥Ñ¥¯¼Á¤Î¥ê¥¹¥È¡¢Reverse PSI-BLAST¤Ç¿·¤¿¤Ë¹½Â¤Í½Â¬¤µ¤ì¤¿ ¥¿¥ó¥Ñ¥¯¼Á¤Î¥ê¥¹¥È¡¢ ͽ¬¹½Â¤¤ÎSCOP¥Õ¥¡¥ß¥ê¡¼¤Î¥é¥ó¥­¥ó¥°¡¢ ProSite¥â¥Á¡¼¥Õ¤Î¥é¥ó¥­¥ó¥°¡¢ Pfam¥Õ¥¡¥ß¥ê¡¼¤Î¥é¥ó¥­¥ó¥° ¤Ê¤É¤ò¸«¤ë¤³¤È¤¬¤Ç¤­¤Þ¤¹¡£ ¤³¤ì¤é¤Ë¤ÏÂбþ¤¹¤ë°äÅÁ»Ò¤Î¥Ú¡¼¥¸¤Ø¤Î¥ê¥ó¥¯¤¬Å½¤Ã¤Æ¤¢¤ê¤Þ¤¹¡£

  7. ¤½¤Î¾

¡ûGTOP¤Ë´Ø¤¹¤ë¼ÁÌ䡦¥³¥á¥ó¥È¤Ï ¤Ë¤ª´ó¤»¤¯¤À¤µ¤¤¡£


¥¿¥¤¥È¥ë¥Ú¡¼¥¸¤ËÌá¤ë